The majority of our older Sanger DNA resequence datasets are available through the “PopSet” archive at NCBI (GenBank). Unfortunately, the PopSet archive does not preserve original alignments. Links to PopSet data sets are below, and original alignments will be added. There are also links to a couple of datasets (e.g., wild barley Adh1 and Adh3, SNP genotyping data from maize and teosinte) that we did not generate but have used in analyses.

Liu et al. 2017 Deleterious variants in Asian rice and the potential cost of domestication. MBE.

Kono et al. 2016. The role of deleterious substitutions in crop genomes. MBE.

  • Barley SNPs from Illumina resequencing, genotyping platforms, and prior Sanger sequencing in VCF format located here.

Poets et al. 2015. The effects of both recent and long-term selection and genetic drift are readily evident in North American barley breeding populations. G3.

Poets et al. 2015. Barley landraces are characterized by geographically heterogeneous genomic origins. Genome Biology.

Fang et al. 2014. Two genomic regions contribute disproportionately to geographic differentiation in wild barley. G3.

  • SNP genotyping from barley oligo pool assay 1 & 2 (BOPA1 & BOPA2) and SSR from the Wild Barley Diversity Collection. SNP calls are based on machine-scored data using Alchemy.

Morrell et al 2014. Resequencing data indicate a modest effect of domestication on diversity in barley: a cultigen with multiple origins. J of Heredity.

Fang et al. 2014. Two genomic regions contribute disproportionately to geographic differentiation in wild barley. G3.

  • Examination of a barley experimental population subject to introgression for Fusarium head blight resistance. Genotypic and phenotypic data for individual lines are available for download from T3 by selecting populations labeled “MN Reopened” and “MN Closed” under “select lines by properties.”

Kono et al. 2013. SNPMeta: SNP annotation and SNP metadata collection without a reference genome. Mol Ecol Resour.

Mascher et al. 2013. Barley whole exome capture: a new tool for genomic research in the genus Hordeum and beyond. Plant J.

Fang et al. 2013. Tracing the geographic origin of weedy Ipomoea purpurea (common morning glory) in the Southeastern United States. J of Heredity.

Fang et al. 2012. Megabase-scale inversion polymorphism in the wild ancestor of maize. Genetics.

  • SNP genotyping data from maize and teosinte is here.

Gonzales et al. 2012. Nucleotide sequence diversity of floral pigment genes in Mexican populations of Ipomoea purpurea (morning glory) accord with a neutral model of evolution. J of Heredity.

Akhunov et al. 2010. Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes. BMC Genomics.

  • Resequencing data from 2,114 wheat genes.

Chen et al. 2009. Tracing the geographic origins of major avocado cultivars. J of Heredity.

Chen et al. 2008. Nucleotide diversity and linkage disequilibrium in wild avocado (Persea americana Mill.). J of Heredity.

Morrell et al. 2007. Genetic evidence for a second domestication of barley (Hordeum vulgare) east of the Fertile Crescent. Proc Natl Acad Sci USA.

Morrell et al. 2006. Estimating the contribution of mutation, recombination and gene conversion in the generation of haplotypic diversity. Genetics.

Morrell et al. 2005. Low levels of linkage disequilibrium in wild barley (Hordeum vulgare ssp. spontaneum) despite high rates of self-fertilization. Proc Natl Acad Sci USA.

Morrell, Lundy, & Clegg 2003. Distinct geographic patterns of genetic diversity are maintained in wild barley (Hordeum vulgare ssp. spontaneum) despite migration. Proc Natl Acad Sci USA.

Lin, Morrell, & Clegg 2002. The influence of linkage and inbreeding on patterns of nucleotide sequence diversity at duplicate alcohol dehydrogenase loci in wild barley (Hordeum vulgare ssp. spontaneum). Genetics.

  • Resequencing data for 25 wild barley accessions for Adh2.

Lin, Brown & Clegg 2001. Heterogeneous geographic patterns of nucleotide sequence diversity between two alcohol dehydrogenase genes in wild barley (Hordeum vulgare subspecies spontaneum). Proc Natl Acad Sci USA.

  • Resequencing data for 25 wild barley accessions for Adh3.

Morrell et al. 2000. Intercontinental dispersal: The origin of the widespread South American plant species Gilia laciniata (Polemoniaceae) from a rare California and Oregon coastal endemic. Plant Syst Evol.

  • Phylogenetic and resequencing data for 28 Gilia accessions for ITS and trnL.

Cummings & Clegg 1998. Nucleotide sequence diversity at the alcohol dehydrogenase 1 locus in wild barley (Hordeum vulgare ssp. spontaneum): An evaluation of the background selection hypothesis. Proc Natl Acad Sci USA.

  • Resequencing data for 25 wild barley accessions for Adh1.

Morrell & Rieseberg 1998. Molecular tests of the proposed diploid hybrid origin of Gilia achilleifolia (Polemoniaceae). Am J Bot.

  • Phylogenetic and resequencing data for 33 Gilia accessions for ITS and trnL.